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Bioinformatician (m/f/d) in the field of Natural Language Processing (NLP)
Aktualität: 11.02.2024


11.02.2024, Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
Bioinformatician (m/f/d) in the field of Natural Language Processing (NLP)
You will apply your experience in Natural Language Processing to make microbial strain data available for the strain discovery database. You will use text mining approaches and NLP to process scientific publications for intelligent information retrieval. As a member of a dynamic team, you will build an annotation platform. Your work will help annotators to capture data sets faster and in a more targeted manner, thus forming an important foundation for the large-scale integration of so far inaccessible research data. You will also use the experience gained in this project in other projects and in knowledge transfer within the institute.
Degree in bioinformatics, computational linguistics, computer science, or a similar qualification Practical programming experience in Python or Julia, knowledge of JavaScript and database systems is beneficial Methodological knowledge in in the preparation of text data (normalization, tokenizing, POS tagging, parsing) and first experiences in the use of common NLP frameworks (e.g. CoreNLP, spaCy, Flair, huggingface) Methodological knowledge of Machine Learning/ Deep Learning for NLP, practical experience with corresponding frameworks (e.g. Tensorflow, pyTorch) is beneficial Git is no foreign word to you Fluent in English / knowledge of German is beneficial You are communicative, able to work in a team and willing to learn You are interested in interdisciplinary work in a dynamic team